Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| KIRC | rs12813731 | chr12:29544842 | T/C | 1.27E-9 | 498 | 37.73 | 33.13 | 6.07 | KM Plot |
| KIRC | rs12813789 | chr12:29483082 | C/T | 6.23E-9 | 505 | 37.7 | 35.48 | 6.07 | KM Plot |
| KIRC | rs12814930 | chr12:29434340 | C/A | 3.96E-9 | 508 | 37.7 | 37.03 | 6.07 | KM Plot |
| KIRC | rs12815222 | chr12:29499578 | A/G | 3.53E-9 | 505 | 37.67 | 35.48 | 5.8 | KM Plot |
| KIRC | rs12817163 | chr12:29422349 | A/G | 4.61E-9 | 506 | 37.67 | 37.25 | 6.07 | KM Plot |
| KIRC | rs12817578 | chr12:29500012 | T/A | 3.6E-9 | 505 | 37.73 | 33.13 | 5.8 | KM Plot |
| KIRC | rs12817985 | chr12:29422762 | A/T | 3.84E-9 | 507 | 37.73 | 35.83 | 6.07 | KM Plot |
| KIRC | rs12818302 | chr12:29422658 | G/A | 4.61E-9 | 506 | 37.67 | 37.25 | 6.07 | KM Plot |
| KIRC | rs12819896 | chr12:29535715 | A/G | 2.9E-9 | 503 | 37.7 | 33.13 | 6.07 | KM Plot |
| KIRC | rs12821498 | chr12:29435333 | C/G | 4.11E-9 | 507 | 37.7 | 37.25 | 6.07 | KM Plot |
| KIRC | rs12821559 | chr12:29542270 | G/T | 3.1E-9 | 501 | 37.73 | 33.93 | 6.07 | KM Plot |
| KIRC | rs12821708 | chr12:29514833 | C/T | 5.58E-9 | 507 | 37.73 | 33.93 | 6.07 | KM Plot |
| KIRC | rs12823372 | chr12:29472216 | G/A | 5.78E-9 | 506 | 37.7 | 35.7 | 6.07 | KM Plot |
| KIRC | rs12823422 | chr12:29423052 | C/G | 4.61E-9 | 506 | 37.67 | 37.25 | 6.07 | KM Plot |
| KIRC | rs12823485 | chr12:29479511 | G/A | 6.25E-9 | 503 | 37.67 | 37.25 | 6.07 | KM Plot |